| Accession | TIGR01863 |
| Name | cas_Csd1 |
| Function | CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG |
| Gene Symbol | cas8c |
| Trusted Cutoff | 218.65 |
| Domain Trusted Cutoff | 218.65 |
| Noise Cutoff | 156.95 |
| Domain Noise Cutoff | 156.95 |
| Isology Type | equivalog |
| HMM Length | 588 |
| Mainrole Category | Mobile and extrachromosomal element functions |
| Subrole Category | Other |
| Gene Ontology Term | GO:0003674: molecular_function molecular_function |
| | GO:0005575: cellular_component cellular_component |
| | GO:0043571: maintenance of CRISPR repeat elements biological_process |
| Author | Haft DH |
| Entry Date | Apr 2 2003 2:31PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | CRISPR loci appear to be mobile elements with a wide host range. This HMM represents a protein that tends to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. We designate this family Csd1 (CRISPR/Cas Subtype DVULG protein 1). The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria. In a few species (Xanthomonas axonopodis pv. citri str. 306 and Streptococcus mutans UA159), homology to this protein family is split across two tandem genes; the trusted cutoff to this family is set low enough to capture at least the longer of the two. |
| References | DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003
DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57300
RN [1]
RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes
RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE
RL PLOS Comput. Biol. 1(6), e60-e69, 2005 |
| Genome Property | GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM) |
| | GenProp0021: CRISPR region (HMM) |
