HMM Summary Page: TIGR01726

Functionamino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
Trusted Cutoff42.20
Domain Trusted Cutoff42.20
Noise Cutoff37.50
Domain Noise Cutoff37.50
Isology Typesubfamily_domain
HMM Length99
Mainrole CategoryTransport and binding proteins
Subrole CategoryAmino acids, peptides and amines
Gene Ontology TermGO:0005887: integral to plasma membrane cellular_component
GO:0015837: amine transport biological_process
GO:0031263: amine-transporting ATPase activity molecular_function
GO:0055052: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing cellular_component
AuthorHaft DH
Entry DateOct 17 2002 10:48AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by PF00528, binding-protein-dependent transport systems inner membrane component. The region covered by this HMM generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.
ReferencesDR PF00528; BPD_transp;