HMM Summary Page: TIGR01714

Functionphage replisome organizer, putative, N-terminal region
Trusted Cutoff49.80
Domain Trusted Cutoff49.80
Noise Cutoff49.50
Domain Noise Cutoff49.50
Isology Typehypoth_equivalog_domain
HMM Length119
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryProphage functions
AuthorHaft DH
Entry DateOct 3 2002 4:01PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region covered by this model is N-terminal to the low-complexity region.
ReferencesRM 10223975 RT Molecular characterization of a phage-encoded resistance system in Lactococcus lactis. RA McGrath S, Seegers JF, Fitzgerald GF, van Sinderen D. RL Appl Environ Microbiol 1999 May;65(5):1891-9