HMM Summary Page: TIGR01646

FunctionRhs element Vgr protein
Trusted Cutoff121.80
Domain Trusted Cutoff121.80
Noise Cutoff113.60
Domain Noise Cutoff113.60
Isology Typesubfamily
HMM Length480
AuthorHaft DH
Entry DateAug 27 2002 4:53PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
ReferencesRM 9696756 RT Rhs elements comprise three subfamilies which diverged prior to acquisition by Escherichia coli. RA Wang YD, Zhao S, Hill CW. RL J Bacteriol 1998 Aug;180(16):4102-10