HMM Summary Page: TIGR01631
Accession | TIGR01631 |
Name | Trypano_RHS |
Function | trypanosome RHS family |
Trusted Cutoff | 89.75 |
Domain Trusted Cutoff | 89.75 |
Noise Cutoff | 28.30 |
Domain Noise Cutoff | 28.30 |
Isology Type | paralog |
HMM Length | 761 |
Author | Haft DH, Bringaud F, Biteau N, El-Sayed, N |
Entry Date | Aug 14 2002 10:03AM |
Last Modified | Feb 14 2011 3:27PM |
Comment | This fragment-mode HMM describes full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position. |
References | RT A new, expressed multigene family containing a hot spot of insertion for retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. RA F. Bringaud, N. Biteau, S.E. Melville, S. Hez, N.M. El-Sayed, V. Leech, M. Berriman, N. Hall, J.E. Donelson and T. Baltz. RL Eukaryotic Cell (2002), 1, 137-151. |