HMM Summary Page: TIGR01631

Functiontrypanosome RHS family
Trusted Cutoff89.75
Domain Trusted Cutoff89.75
Noise Cutoff28.30
Domain Noise Cutoff28.30
Isology Typeparalog
HMM Length761
AuthorHaft DH, Bringaud F, Biteau N, El-Sayed, N
Entry DateAug 14 2002 10:03AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis fragment-mode HMM describes full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
ReferencesRT A new, expressed multigene family containing a hot spot of insertion for retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. RA F. Bringaud, N. Biteau, S.E. Melville, S. Hez, N.M. El-Sayed, V. Leech, M. Berriman, N. Hall, J.E. Donelson and T. Baltz. RL Eukaryotic Cell (2002), 1, 137-151.