HMM Summary Page: TIGR01629

Functionphage/plasmid replication protein, gene II/X family
Trusted Cutoff29.00
Domain Trusted Cutoff29.00
Noise Cutoff21.00
Domain Noise Cutoff21.00
Isology Typesubfamily
HMM Length407
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryProphage functions
Gene Ontology TermGO:0006260: DNA replication biological_process
AuthorHaft DH
Entry DateAug 12 2002 11:16AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents a family of phage and plasmid replication proteins. In bacteriophage IKe and related phage, the full-length protein is designated gene II protein. A much shorter protein of unknown function, translated from a conserved in-frame alternative initiator, is designated gene X protein. Members of this family also include plasmid replication proteins. This model is built as a fragment model to better detect translations from alternate intiators and other fragments relative to full length gene II protein.