Accession | TIGR01629 |
Name | rep_II_X |
Function | phage/plasmid replication protein, gene II/X family |
Trusted Cutoff | 29.00 |
Domain Trusted Cutoff | 29.00 |
Noise Cutoff | 21.00 |
Domain Noise Cutoff | 21.00 |
Isology Type | subfamily |
HMM Length | 407 |
Mainrole Category | Mobile and extrachromosomal element functions |
Subrole Category | Prophage functions |
Gene Ontology Term | GO:0006260: DNA replication biological_process |
Author | Haft DH |
Entry Date | Aug 12 2002 11:16AM |
Last Modified | Feb 14 2011 3:27PM |
Comment | This HMM represents a family of phage and plasmid replication proteins. In bacteriophage IKe and related phage, the full-length protein is designated gene II protein. A much shorter protein of unknown function, translated from a conserved in-frame alternative initiator, is designated gene X protein. Members of this family also include plasmid replication proteins. This model is built as a fragment model to better detect translations from alternate intiators and other fragments relative to full length gene II protein. |