HMM Summary Page: TIGR01557

Functionmyb-like DNA-binding domain, SHAQKYF class
Trusted Cutoff29.30
Domain Trusted Cutoff29.30
Noise Cutoff26.05
Domain Noise Cutoff26.05
Isology Typesubfamily_domain
HMM Length57
AuthorHaft DH, Hannick LI
Entry DateJun 18 2002 11:36AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model PF00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
ReferencesRN [1] RM 10652136 RT The tomato I-box binding factor LeMYBI is a member of a novel class of myb-like proteins. RA Rose A, Meier I, Wienand U. RL Plant J 1999 Dec;20(6):641-52 RN [2] RM 7957104 RT A novel DNA binding protein with homology to Myb oncoproteins containing only one repeat can function as a transcriptional activator. RA Baranowskij N, Frohberg C, Prat S, Willmitzer L. RL EMBO J 1994 Nov 15;13(22):5383-92