HMM Summary Page: TIGR01478

Functionvariant surface antigen, stevor family
Trusted Cutoff166.65
Domain Trusted Cutoff166.65
Noise Cutoff57.35
Domain Noise Cutoff57.35
Isology Typeparalog
HMM Length308
AuthorHaft DH, Berriman M
Entry DateMar 21 2002 2:27PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents the stevor branch of the rifin/stevor family (PF02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.