HMM Summary Page: TIGR01477

Functionvariant surface antigen, rifin family
Trusted Cutoff176.95
Domain Trusted Cutoff176.95
Noise Cutoff54.30
Domain Noise Cutoff54.30
Isology Typeparalog
HMM Length356
AuthorHaft DH, Berriman M
Entry DateMar 21 2002 2:22PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents the rifin branch of the rifin/stevor family (PF02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.