HMM Summary Page: TIGR01291

FunctionABC-2 type transporter, NodJ family
Trusted Cutoff206.65
Domain Trusted Cutoff206.65
Noise Cutoff79.45
Domain Noise Cutoff79.45
Isology Typesubfamily
HMM Length253
Mainrole CategoryCellular processes
Subrole CategoryOther
Gene Ontology TermGO:0005887: integral to plasma membrane cellular_component
GO:0033231: carbohydrate export biological_process
GO:0043212: carbohydrate-exporting ATPase activity molecular_function
GO:0055051: ATP-binding cassette (ABC) transporter complex, integrated substrate binding cellular_component
AuthorHaft DH
Entry DateJun 27 2001 11:12AM
Last ModifiedFeb 14 2011 3:27PM
CommentNearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This HMM is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
ReferencesHMM Accession Genes hitting family DR PFAM; PF01061; ABC-2 type transporter