HMM Summary Page: TIGR01196
| Accession | TIGR01196 |
| Name | edd |
| Function | phosphogluconate dehydratase |
| Gene Symbol | edd |
| Trusted Cutoff | 708.25 |
| Domain Trusted Cutoff | 708.25 |
| Noise Cutoff | 349.50 |
| Domain Noise Cutoff | 349.50 |
| Isology Type | equivalog |
| EC Number | 4.2.1.12 |
| HMM Length | 601 |
| Mainrole Category | Energy metabolism |
| Subrole Category | Entner-Doudoroff |
| Gene Ontology Term | GO:0004456: phosphogluconate dehydratase activity molecular_function |
| GO:0009255: Entner-Doudoroff pathway biological_process | |
| Author | Haft DH |
| Entry Date | Mar 5 2001 1:08PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This HMM includes mocB above the trusted cutoff, although the designation is somewhat tenuous. |
| References | RM 8655509 |
| Genome Property | GenProp0468: Entner-Doudoroff pathway (HMM) |