HMM Summary Page: TIGR01195

Functionsodium pump decarboxylases, gamma subunit
Trusted Cutoff36.05
Domain Trusted Cutoff36.05
Noise Cutoff32.80
Domain Noise Cutoff32.80
Isology Typesubfamily
HMM Length84
AuthorHaft DH
Entry DateMar 4 2001 11:35PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis model finds the subfamily of distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
References DR HAMAP; MF_00404; 18 of 18