HMM Summary Page: TIGR01068

Gene SymboltrxA
Trusted Cutoff96.80
Domain Trusted Cutoff96.80
Noise Cutoff75.70
Domain Noise Cutoff75.70
Isology Typeequivalog
HMM Length101
Mainrole CategoryEnergy metabolism
Subrole CategoryElectron transport
Gene Ontology TermGO:0005737: cytoplasm cellular_component
GO:0015036: disulfide oxidoreductase activity molecular_function
GO:0055114: oxidation-reduction process biological_process
AuthorHaft DH
Entry DateDec 8 2000 3:49PM
Last ModifiedFeb 14 2011 3:27PM
CommentSeveral proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this HMM. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin.
Genome PropertyGenProp0800: bacterial core gene set, 1 or more per genome (HMM)