HMM Summary Page: TIGR01049

Functionribosomal protein uS10
Gene SymbolrpsJ
Trusted Cutoff72.75
Domain Trusted Cutoff72.75
Noise Cutoff70.00
Domain Noise Cutoff70.00
Isology Typeequivalog
HMM Length99
Mainrole CategoryProtein synthesis
Subrole CategoryRibosomal proteins: synthesis and modification
Gene Ontology TermGO:0000314: organellar small ribosomal subunit cellular_component
GO:0003735: structural constituent of ribosome molecular_function
GO:0006412: translation biological_process
GO:0022627: cytosolic small ribosomal subunit cellular_component
AuthorHaft DH, Ujwal ML
Entry DateNov 22 2000 3:21PM
Last ModifiedSep 4 2014 10:50AM
CommentThis HMM describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
References DR HAMAP; MF_00508; 534 of 587
Genome PropertyGenProp0132: transcription termination - antitermination Nus factors (HMM)
GenProp0175: ribosome, bacterial, small subunit (HMM)
GenProp0799: bacterial core gene set, exactly 1 per genome (HMM)