| Accession | TIGR01045 |
| Name | RPE1 |
| Function | rickettsial palindromic element RPE1 domain |
| Trusted Cutoff | 30.00 |
| Domain Trusted Cutoff | 30.00 |
| Noise Cutoff | 29.25 |
| Domain Noise Cutoff | 29.25 |
| Isology Type | domain |
| HMM Length | 48 |
| Author | Haft DH |
| Entry Date | Nov 20 2000 3:04PM |
| Last Modified | Mar 2 2011 2:55PM |
| Comment | This HMM describes protein translations of the first family described, RPE1, of Rickettsia palindromic elements (RPE). In Rickettsia conorii, 19 copies are found within protein coding regions, where they encode an insert relative to homologs from other species but do not disrupt the reading frame. Insertion is always in the same reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else. |
| References | RM 20485642
RT Selfish DNA in protein-coding genes of rickettsia.
RA Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM
RL Science 2000 Oct 13;290(5490):347-50
DR HAMAP; MF_02005; 1 of 47 |
| Genome Property | GenProp0476: protein-coding palindromic elements (HMM) |
