HMM Summary Page: TIGR00414

Functionserine--tRNA ligase
Gene SymbolserS
Trusted Cutoff301.65
Domain Trusted Cutoff301.65
Noise Cutoff225.60
Domain Noise Cutoff225.60
Isology Typeequivalog
EC Number6.1.1.11
HMM Length418
Mainrole CategoryProtein synthesis
Subrole CategorytRNA aminoacylation
Gene Ontology TermGO:0004828: serine-tRNA ligase activity molecular_function
GO:0005737: cytoplasm cellular_component
GO:0006434: seryl-tRNA aminoacylation biological_process
AuthorHaft DH
Entry DateApr 20 1999 2:09PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam HMM tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
ReferencesSE TIGR GA hmmls DR PFAM; PF00587; AL clustalw, seaview, belvu DR HAMAP; MF_00176; 529 of 536
Genome PropertyGenProp0258: tRNA aminoacylation (HMM)
GenProp0799: bacterial core gene set, exactly 1 per genome (HMM)