HMM Summary Page: TIGR00374

FunctionTIGR00374 family protein
Trusted Cutoff43.20
Domain Trusted Cutoff43.20
Noise Cutoff33.60
Domain Noise Cutoff33.60
Isology Typesuperfamily
HMM Length323
Mainrole CategoryHypothetical proteins
Subrole CategoryConserved
AuthorHaft DH
Entry DateApr 20 1999 2:05PM
Last ModifiedMar 9 2012 12:15PM
CommentThis HMM is built on a superfamily of proteins in the Archaea and in Aquifex aeolicus. The authenticity of homology can be seen in the presence of motifs in the alignment that include residues relatively rare among these sequences, even though the alignment includes long regions of low-complexity hydrophobic sequences. One apparent fusion protein contains a Glycos_transf_2 region in the N-terminal half of the protein and a region homologous to this superfamily in the C-terminal region.
ReferencesA2 hmmalign SE TIGR GA hmmls AL clustalw, belvu BD build_dir/