HMM Summary Page: TIGR00367

FunctionK+-dependent Na+/Ca+ exchanger homolog
Trusted Cutoff179.65
Domain Trusted Cutoff179.65
Noise Cutoff150.30
Domain Noise Cutoff150.30
Isology Typehypoth_equivalog
HMM Length312
Mainrole CategoryUnknown function
Subrole CategoryGeneral
AuthorLoftus BJ
Entry DateApr 20 1999 2:05PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM models a family of bacterial and archaeal proteins that is homologous, except for lacking a central region of ~ 250 amino acids and an N-terminal region of > 100 residues, to a functionally proven potassium-dependent sodium-calcium exchanger of the rat.
ReferencesA2 hmmalign RM 98129830 RT Molecular cloning of a novel potassium-dependent sodium-calcium exchanger from rat brain. RA Tsoi M, Rhee KH, Bungard D, Li XF, Lee SL, Auer RN, Lytton J RL J Biol Chem 1998 Feb 13;273(7):4155-62 DR EGAD:151001, EGAD:159812 SE TIGR GA hmmls AL clustalw, belvu