HMM Summary Page: TIGR00335

Functionputative DNA primase, eukaryotic-type, small subunit
Trusted Cutoff143.50
Domain Trusted Cutoff143.50
Noise Cutoff81.10
Domain Noise Cutoff81.10
Isology Typeequivalog
HMM Length324
Mainrole CategoryDNA metabolism
Subrole CategoryDNA replication, recombination, and repair
Gene Ontology TermGO:0003896: DNA primase activity molecular_function
GO:0005658: alpha DNA polymerase:primase complex cellular_component
GO:0006269: DNA replication, synthesis of RNA primer biological_process
AuthorHaft DH
Entry DateApr 20 1999 2:09PM
Last ModifiedFeb 14 2011 3:27PM
CommentArchaeal members differ substantially from eukaryotic members and should be considered putative pending experimental evidence. The protein is universal and single copy among completed archaeal and eukarotic genomes to date. DNA primase creates RNA primers needed for DNA replication. This HMM is named putative because the assignment is putative for archaeal proteins. Eukaryotic proteins scoring above the trusted cutoff can be considered authentic.
ReferencesSE TIGR GA hmmls AL clustalw, belvu, seaview DR HAMAP; MF_00700; 32 of 38