HMM Summary Page: TIGR00197

FunctionYjeF family N-terminal domain
Trusted Cutoff88.60
Domain Trusted Cutoff88.60
Noise Cutoff64.35
Domain Noise Cutoff64.35
Isology Typehypoth_equivalog_domain
HMM Length206
Mainrole CategoryUnknown function
Subrole CategoryGeneral
AuthorHaft DH
Entry DateApr 20 1999 2:10PM
Last ModifiedNov 29 2011 3:20PM
CommentThe protein region corresponding to this HMM shows no clear homology to any protein of known function. This HMM is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
ReferencesSE TIGR AL clustalw_manual A2 hmmalign GA hmmls