HMM Summary Page: TIGR00094

FunctiontRNA pseudouridine synthase, TruD family
Trusted Cutoff172.20
Domain Trusted Cutoff172.20
Noise Cutoff60.85
Domain Noise Cutoff60.85
Isology Typesubfamily
EC Number5.4.99.-
HMM Length413
Mainrole CategoryProtein synthesis
Subrole CategorytRNA and rRNA base modification
Gene Ontology TermGO:0016439: tRNA-pseudouridine synthase activity molecular_function
GO:0031119: tRNA pseudouridine synthesis biological_process
AuthorHaft DH
Entry DateApr 20 1999 2:04PM
Last ModifiedFeb 14 2011 3:27PM
Commentan EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa.
ReferencesRN [1] RM PMID:12756329 RT A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya. RA Kaya Y, Ofengand J RL RNA. 2003 Jun;9(6):711-21. SE TIGR GA hmmsw AL clustalw DR HAMAP; MF_01082; 111 of 135